[MSNoise] broken msnoise with numpy update??

[Thomas Lecocq]

Hello Dylan,

Indeed, this looks like an incompatibility of types passed to resample
... You could maybre try to re-build the scikits-samplerate package
(uninstall and reinstall), that *could* work. Otherwise, either
downgrade numpy, or if you don't actually need the resampling (because
e.g. all your data is 100 Hz and you want to decimate to 20 Hz), you can
ignore it and use Decimate instead.

Could you open an issue on github for this ?

Thanks

Thomas

Le 13/11/2015 21:45, Dylan Mikesell a écrit :
> Hi MSNoise folks,
>
> I have a question about numpy. I installed cartopy today and during
> the install conda updated a bunch of other libraries, one of which was
> numpy. I had numpy 1.9.2 and updated to 1.10.0. Now when running
> 'compute_cc' I get the following error. I am not completely sure, but
> I believe it's related to samplerate and the input numpy data type.
> Has anyone ran into this error?
>
> Any thoughts on how to figure it out? I reinstalled scikits.samplrate,
> but that hasn't fixed the problem. And interestingly, the 'bugreport'
> says that samplerate is not found so perhaps this is the problem. But
> I haven't been able to figure it out yet and this error leads me to
> believe it's a problem with the numpy type.
> Thanks,
>
> Dylan
>
>
> [dmikesell at sonic deconData]$ msnoise compute_cc
>
> Traceback (most recent call last):
>   File "/usr/local/anaconda/bin/msnoise", line 11, in <module>
>     sys.exit(run())
>   File
> "/usr/local/anaconda/lib/python2.7/site-packages/msnoise/scripts/msnoise.py",
> line 393, in run
>     cli(obj={})
>   File
> "/usr/local/anaconda/lib/python2.7/site-packages/click/core.py", line
> 700, in __call__
>     return self.main(*args, **kwargs)
>   File
> "/usr/local/anaconda/lib/python2.7/site-packages/click/core.py", line
> 680, in main
>     rv = self.invoke(ctx)
>   File
> "/usr/local/anaconda/lib/python2.7/site-packages/click/core.py", line
> 1027, in invoke
>     return _process_result(sub_ctx.command.invoke(sub_ctx))
>   File
> "/usr/local/anaconda/lib/python2.7/site-packages/click/core.py", line
> 873, in invoke
>     return ctx.invoke(self.callback, **ctx.params)
>   File
> "/usr/local/anaconda/lib/python2.7/site-packages/click/core.py", line
> 508, in invoke
>     return callback(*args, **kwargs)
>   File
> "/usr/local/anaconda/lib/python2.7/site-packages/msnoise/scripts/msnoise.py",
> line 173, in compute_cc
>     from ..s03compute_cc import main
>   File
> "/usr/local/anaconda/lib/python2.7/site-packages/msnoise/s03compute_cc.py",
> line 71, in <module>
>     from scikits.samplerate import resample
>   File
> "/usr/local/anaconda/lib/python2.7/site-packages/scikits.samplerate-0.3.3-py2.7-linux-x86_64.egg/scikits/samplerate/__init__.py",
> line 6, in <module>
>     from _samplerate import resample, available_convertors,
> src_version_str, \
>   File "numpy.pxd", line 43, in scikits.samplerate._samplerate
> (scikits/samplerate/_samplerate.c:3807)
> ValueError: numpy.dtype does not appear to be the correct type object
>
>