[MSNoise] Station list

Tue Sep 20 14:50:29 UTC 2016

Sorry, but there is another problem...

i ran:

msnoise -t 2 scan_archive --init

msnoise new_jobs

without problems.

then i tried with

msnoise -t 4 compute_cc

it starts to work, but after some time it produces this error:

...

2016-09-20 16:42:18 [DEBUG] Azimuth=258.9
Process Process-1:
Traceback (most recent call last):
  File "/home/blaz/miniconda2/lib/python2.7/multiprocessing/process.py", line 258, in _bootstrap
    self.run()
  File "/home/blaz/miniconda2/lib/python2.7/multiprocessing/process.py", line 114, in run
    self._target(*self._args, **self._kwargs)
  File "/home/blaz/miniconda2/lib/python2.7/site-packages/msnoise/s03compute_cc.py", line 683, in main
    export_allcorr(db, ccfid, allcorr[ccfid])
  File "/home/blaz/miniconda2/lib/python2.7/site-packages/msnoise/api.py", line 825, in export_allcorr
    df.to_hdf(os.path.join(path, date+'.h5'), 'data')
  File "/home/blaz/miniconda2/lib/python2.7/site-packages/pandas/core/generic.py", line 1101, in to_hdf
    return pytables.to_hdf(path_or_buf, key, self, **kwargs)
  File "/home/blaz/miniconda2/lib/python2.7/site-packages/pandas/io/pytables.py", line 259, in to_hdf
    complib=complib) as store:
  File "/home/blaz/miniconda2/lib/python2.7/site-packages/pandas/io/pytables.py", line 389, in __init__
    'importing'.format(ex=str(ex)))
ImportError: HDFStore requires PyTables, "No module named tables" problem importing

I tried reinstalling PyTables without luck.

Thanks!

________________________________
From: msnoise-bounces at mailman-as.oma.be <msnoise-bounces at mailman-as.oma.be> on behalf of VICIC BLAZ [PHD0900016] <BLAZ.VICIC at phd.units.it>
Sent: Tuesday, September 20, 2016 3:43:22 PM
To: msnoise at mailman-as.oma.be
Subject: Re: [MSNoise] Station list

Thanks, it works now.

Blaž

________________________________
From: msnoise-bounces at mailman-as.oma.be <msnoise-bounces at mailman-as.oma.be> on behalf of Thomas Lecocq <Thomas.Lecocq at seismology.be>
Sent: Tuesday, September 20, 2016 3:01:07 PM
To: msnoise at mailman-as.oma.be
Subject: Re: [MSNoise] Station list

Hi,

You have to import data_structure too :

from msnoise.data_structures import data_structure

otherwise it'll fail (your custom.py file is not valid, fails at import).

Thomas

On 20/09/2016 12:59, VICIC BLAZ [PHD0900016] wrote:
> Thank you.
>
>
> Which brings me to the 2nd question...
>
> I tried to populate with this command, but of course it is not working...
>
>
> What I tried:
>
>
> in the folder
>
> msnoise/data I have put a miniseed file of one station of one day.
>
> Name of the miniseed is in the format:
>
> STA.NET.CHAN.YEAR.DAY
>
>
> as data_folder in settings I have set this folder.
>
>
> in the data_structures.py I added this line:
>
> data_structure['SEI'] = "STA.NET.CHAN.YEAR.DAY"
>
>
> i created a custom.py script:
>
>
> from obspy import read
>
> data_structure['SEI'] = "STA.NET.CHAN.YEAR.DAY"
>
> def populate():
>      st = read("*")
>      st.merge()
>
>      stations = []
>
>      for tr in st:
>          sta = str(tr.stats.station)
>          net = str(tr.stats.network)
>          stations.append(str("%s_%s") % (net, sta))
>
>      return stations
>
> So,now i have main folder with sub folder data, where I have miniseed file. in the main folder I put custom.py and db.ini and, if I understand right, run msnoise populate from here. In the browser I set data_folder to where my miniseed is and data_structure as SEI.
>
> When i run the populate command, i get error:
>
>
> ()
>>> Populating the Station table
> ()
> Can't parse the archive for format SEI !
> trying to import local parser (should return a station list)
> ()
> No file named custom.py in the /home/blaz/Documents/msnoise folder
>
> (custom.py IS in /home/blaz/Documents/msnoise)
> I hope I was clear enough.
>
> Thanks!
>
>
>
>
>
> ________________________________
> From: msnoise-bounces at mailman-as.oma.be <msnoise-bounces at mailman-as.oma.be> on behalf of Thomas Lecocq <Thomas.Lecocq at seismology.be>
> Sent: Tuesday, September 20, 2016 12:56:56 PM
> To: msnoise at mailman-as.oma.be
> Subject: Re: [MSNoise] Station list
>
> Hi,
>
> Yes, this bug was recently reported by another user and I haven't had
> time to fix it.
>
> The best way to add the station currently is to use the "msnoise
> populate" command.
>
> Cheers,
>
> Thomas
>
>
> On 20/09/2016 11:51, VICIC BLAZ [PHD0900016] wrote:
>> Dear all
>>
>>
>> I would like to try to use msnoise. I installed it on Ubuntu 16.04, and as far as I know, everything was installed as planed.
>>
>> Now, I open msnoise admin and try to manually add stations in the browser. I set NET, STA, X, Y, ALT, COORD and click save. When I do that, I get a lot of errors:
>>
>>
>>     *
>> File "/home/blaz/miniconda2/lib/python2.7/site-packages/flask/app.py", line 2000, in __call__
>>
>> return self.wsgi_app(environ, start_response)
>>
>>     *
>> File "/home/blaz/miniconda2/lib/python2.7/site-packages/flask/app.py", line 1991, in wsgi_app
>>
>> response = self.make_response(self.handle_exception(e))
>>
>>     *
>> File "/home/blaz/miniconda2/lib/python2.7/site-packages/flask/app.py", line 1567, in handle_exception
>>
>> reraise(exc_type, exc_value, tb)
>>
>>     *
>> File "/home/blaz/miniconda2/lib/python2.7/site-packages/flask/app.py", line 1988, in wsgi_app
>>
>> response = self.full_dispatch_request()
>>
>>     *
>> File "/home/blaz/miniconda2/lib/python2.7/site-packages/flask/app.py", line 1641, in full_dispatch_request
>>
>> rv = self.handle_user_exception(e)
>>
>>     *
>> File "/home/blaz/miniconda2/lib/python2.7/site-packages/flask/app.py", line 1544, in handle_user_exception
>>
>> reraise(exc_type, exc_value, tb)
>>
>>     *
>> File "/home/blaz/miniconda2/lib/python2.7/site-packages/flask/app.py", line 1639, in full_dispatch_request
>>
>> rv = self.dispatch_request()
>>
>>     *
>> File "/home/blaz/miniconda2/lib/python2.7/site-packages/flask/app.py", line 1625, in dispatch_request
>>
>> return self.view_functions[rule.endpoint](**req.view_args)
>>
>>     *
>> File "/home/blaz/miniconda2/lib/python2.7/site-packages/flask_admin/base.py", line 69, in inner
>>
>> return self._run_view(f, *args, **kwargs)
>>
>>     *
>> File "/home/blaz/miniconda2/lib/python2.7/site-packages/flask_admin/base.py", line 368, in _run_view
>>
>> return fn(self, *args, **kwargs)
>>
>>     *
>> File "/home/blaz/miniconda2/lib/python2.7/site-packages/flask_admin/model/base.py", line 1920, in create_view
>>
>> model = self.create_model(form)
>>
>>     *
>> File "/home/blaz/miniconda2/lib/python2.7/site-packages/flask_admin/contrib/sqla/view.py", line 1028, in create_model
>>
>> if not self.handle_view_exception(ex):
>>
>>     *
>> File "/home/blaz/miniconda2/lib/python2.7/site-packages/flask_admin/contrib/sqla/view.py", line 1011, in handle_view_exception
>>
>> return super(ModelView, self).handle_view_exception(exc)
>>
>>     *
>> File "/home/blaz/miniconda2/lib/python2.7/site-packages/flask_admin/contrib/sqla/view.py", line 1022, in create_model
>>
>> model = self.model()
>>
>> TypeError: __init__() takes exactly 9 arguments (1 given)
>>
>>
>>
>> What am I doing wrong?
>>
>>
>> Thanks,
>>
>> Blaz
>> _______________________________________________
>> MSNoise mailing list
>> MSNoise at mailman-as.oma.be
>> http://mailman-as.oma.be/mailman/listinfo/msnoise
> _______________________________________________
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> http://mailman-as.oma.be/mailman/listinfo/msnoise

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