[MSNoise] Problem with database conection.

Oscar Alberto Castro Artola oscar.cas.art at gmail.com
Tue Jun 20 16:35:10 UTC 2017


Hello,

in order to solve the "*Intel MKL FATAL ERROR: Cannot load libmkl_avx.so or
libmkl_def.so*" I did the following (as root because my Anaconda was
installed in */usr/local/anaconda*):

*conda install nomkl numexpr  *

after that, the *msnoise -t 20 compute_mwcs* seems to work properly.

Thanks!

Cheers,

Oscar

On Mon, Jun 19, 2017 at 2:07 PM, Oscar Alberto Castro Artola <
oscar.cas.art at gmail.com> wrote:

> Dear Thomas,
>
> I've tried:
>
> *$ sudo pip uninstall msnoise *
> *sudo: pip: command not found*
>
> so I did it like root:
>
> *pip install msnoise -U*
>
> and everything looks fine. Then I did:
>
> *msnoise upgrade_db*
>
> and when I try to continue calculating the MWCS, this happens:
>
> *$ msnoise -t 20 compute_mwcs*
> */usr/local/anaconda/lib/python2.7/site-packages/pandas/core/computation/__init__.py:18:
> UserWarning: The installed version of numexpr 2.3.1 is not supported in
> pandas and will be not be used*
> *The minimum supported version is 2.4.6*
>
> *  ver=ver, min_ver=_MIN_NUMEXPR_VERSION), UserWarning)*
> *2017-06-19 13:59:08 [INFO] *** Starting: Compute MWCS ****
> *2017-06-19 13:59:08 [DEBUG] Ready to compute*
> *2017-06-19 13:59:09 [INFO] There are MWCS jobs for some days to recompute
> for IG.MOIG:IG.TLIG*
> *2017-06-19 13:59:09 [INFO] *** Starting: Compute MWCS ****
> *2017-06-19 13:59:09 [DEBUG] Processing MWCS for: IG_MOIG_IG_TLIG.ZZ.01 -
> 2009-10-16 - 10 days*
> *Intel MKL FATAL ERROR: Cannot load libmkl_avx.so or libmkl_def.so.*
> *2017-06-19 13:59:09 [DEBUG] Ready to compute*
> *2017-06-19 13:59:10 [INFO] There are MWCS jobs for some days to recompute
> for IG.OXIG:IG.TLIG*
> *2017-06-19 13:59:10 [INFO] *** Starting: Compute MWCS ****
> *2017-06-19 13:59:10 [DEBUG] Processing MWCS for: IG_OXIG_IG_TLIG.ZZ.01 -
> 2009-10-16 - 10 days*
> *Intel MKL FATAL ERROR: Cannot load libmkl_avx.so or libmkl_def.so.*
> *2017-06-19 13:59:10 [DEBUG] Ready to compute*
> *2017-06-19 13:59:11 [INFO] There are MWCS jobs for some days to recompute
> for IG.PLIG:IG.TLIG*
> *2017-06-19 13:59:11 [INFO] *** Starting: Compute MWCS ****
> *2017-06-19 13:59:11 [DEBUG] Processing MWCS for: IG_PLIG_IG_TLIG.ZZ.01 -
> 2009-10-16 - 10 days*
> *Intel MKL FATAL ERROR: Cannot load libmkl_avx.so or libmkl_def.so.*
> *2017-06-19 13:59:11 [DEBUG] Ready to compute*
> *2017-06-19 13:59:12 [INFO] There are MWCS jobs for some days to recompute
> for IG.PNIG:IG.TLIG*
> *2017-06-19 13:59:12 [DEBUG] Processing MWCS for: IG_PNIG_IG_TLIG.ZZ.01 -
> 2009-10-16 - 10 days*
> *Intel MKL FATAL ERROR: Cannot load libmkl_avx.so or libmkl_def.so.*
> *2017-06-19 13:59:12 [INFO] *** Starting: Compute MWCS ****
> *2017-06-19 13:59:12 [DEBUG] Ready to compute*
> *2017-06-19 13:59:13 [INFO] There are MWCS jobs for some days to recompute
> for IG.TLIG:IG.YAIG*
> *2017-06-19 13:59:13 [INFO] *** Starting: Compute MWCS ****
> *2017-06-19 13:59:13 [DEBUG] Processing MWCS for: IG_TLIG_IG_YAIG.ZZ.01 -
> 2009-10-16 - 10 days*
> *Intel MKL FATAL ERROR: Cannot load libmkl_avx.so or libmkl_def.so.*
> *2017-06-19 13:59:13 [DEBUG] Ready to compute*
> *2017-06-19 13:59:14 [INFO] *** Starting: Compute MWCS ****
> *2017-06-19 13:59:14 [INFO] There are MWCS jobs for some days to recompute
> for IG.TLIG:IG.ZIIG*
> *2017-06-19 13:59:14 [DEBUG] Processing MWCS for: IG_TLIG_IG_ZIIG.ZZ.01 -
> 2009-10-16 - 10 days*
> *Intel MKL FATAL ERROR: Cannot load libmkl_avx.so or libmkl_def.so.*
> *2017-06-19 13:59:14 [DEBUG] Ready to compute*
> *2017-06-19 13:59:15 [INFO] There are MWCS jobs for some days to recompute
> for IG.HLIG:IG.MEIG*
> *2017-06-19 13:59:15 [INFO] *** Starting: Compute MWCS ****
> *2017-06-19 13:59:15 [DEBUG] Processing MWCS for: IG_HLIG_IG_MEIG.ZZ.01 -
> 2009-12-09 - 10 days*
> *Intel MKL FATAL ERROR: Cannot load libmkl_avx.so or libmkl_def.so.*
> *2017-06-19 13:59:15 [DEBUG] Ready to compute*
> *2017-06-19 13:59:16 [INFO] There are MWCS jobs for some days to recompute
> for IG.HLIG:IG.MMIG*
> *2017-06-19 13:59:16 [DEBUG] Processing MWCS for: IG_HLIG_IG_MMIG.ZZ.01 -
> 2009-12-09 - 10 days*
> *2017-06-19 13:59:16 [INFO] *** Starting: Compute MWCS ****
> *Intel MKL FATAL ERROR: Cannot load libmkl_avx.so or libmkl_def.so.*
> *2017-06-19 13:59:16 [DEBUG] Ready to compute*
> *2017-06-19 13:59:17 [INFO] There are MWCS jobs for some days to recompute
> for IG.HLIG:IG.MOIG*
> *2017-06-19 13:59:17 [DEBUG] Processing MWCS for: IG_HLIG_IG_MOIG.ZZ.01 -
> 2009-12-09 - 10 days*
> *Intel MKL FATAL ERROR: Cannot load libmkl_avx.so or libmkl_def.so.*
> *2017-06-19 13:59:17 [INFO] *** Starting: Compute MWCS ****
> *2017-06-19 13:59:17 [DEBUG] Ready to compute*
> *2017-06-19 13:59:18 [INFO] There are MWCS jobs for some days to recompute
> for IG.HLIG:IG.OXIG*
> *2017-06-19 13:59:18 [DEBUG] Processing MWCS for: IG_HLIG_IG_OXIG.ZZ.01 -
> 2009-12-09 - 10 days*
> *Intel MKL FATAL ERROR: Cannot load libmkl_avx.so or libmkl_def.so.*
> *2017-06-19 13:59:18 [INFO] *** Starting: Compute MWCS ****
> *2017-06-19 13:59:18 [DEBUG] Ready to compute*
> *2017-06-19 13:59:19 [INFO] There are MWCS jobs for some days to recompute
> for IG.HLIG:IG.PLIG*
> *2017-06-19 13:59:19 [DEBUG] Processing MWCS for: IG_HLIG_IG_PLIG.ZZ.01 -
> 2009-12-09 - 10 days*
> *Intel MKL FATAL ERROR: Cannot load libmkl_avx.so or libmkl_def.so.*
> *2017-06-19 13:59:19 [INFO] *** Starting: Compute MWCS ****
> *2017-06-19 13:59:19 [DEBUG] Ready to compute*
> *2017-06-19 13:59:20 [INFO] There are MWCS jobs for some days to recompute
> for IG.HLIG:IG.PNIG*
> *2017-06-19 13:59:20 [INFO] *** Starting: Compute MWCS ****
> *2017-06-19 13:59:20 [DEBUG] Processing MWCS for: IG_HLIG_IG_PNIG.ZZ.01 -
> 2009-12-09 - 10 days*
> *Intel MKL FATAL ERROR: Cannot load libmkl_avx.so or libmkl_def.so.*
> *2017-06-19 13:59:20 [DEBUG] Ready to compute*
> *2017-06-19 13:59:21 [INFO] There are MWCS jobs for some days to recompute
> for IG.HLIG:IG.TLIG*
> *2017-06-19 13:59:21 [DEBUG] Processing MWCS for: IG_HLIG_IG_TLIG.ZZ.01 -
> 2009-12-09 - 10 days*
> *Intel MKL FATAL ERROR: Cannot load libmkl_avx.so or libmkl_def.so.*
> *2017-06-19 13:59:21 [INFO] *** Starting: Compute MWCS ****
> *2017-06-19 13:59:21 [DEBUG] Ready to compute*
> *2017-06-19 13:59:22 [INFO] There are MWCS jobs for some days to recompute
> for IG.HLIG:IG.YAIG*
> *2017-06-19 13:59:22 [INFO] *** Starting: Compute MWCS ****
> *2017-06-19 13:59:22 [DEBUG] Processing MWCS for: IG_HLIG_IG_YAIG.ZZ.01 -
> 2009-12-09 - 10 days*
> *Intel MKL FATAL ERROR: Cannot load libmkl_avx.so or libmkl_def.so.*
> *2017-06-19 13:59:22 [DEBUG] Ready to compute*
> *2017-06-19 13:59:23 [INFO] There are MWCS jobs for some days to recompute
> for IG.HLIG:IG.ZIIG*
> *2017-06-19 13:59:23 [INFO] *** Starting: Compute MWCS ****
> *2017-06-19 13:59:23 [DEBUG] Processing MWCS for: IG_HLIG_IG_ZIIG.ZZ.01 -
> 2009-12-09 - 10 days*
> *Intel MKL FATAL ERROR: Cannot load libmkl_avx.so or libmkl_def.so.*
> *2017-06-19 13:59:23 [DEBUG] Ready to compute*
> *2017-06-19 13:59:23 [INFO] *** Finished: Compute MWCS ****
> *2017-06-19 13:59:24 [INFO] *** Starting: Compute MWCS ****
> *2017-06-19 13:59:24 [DEBUG] Ready to compute*
> *2017-06-19 13:59:24 [INFO] *** Finished: Compute MWCS ****
> *2017-06-19 13:59:25 [INFO] *** Starting: Compute MWCS ****
> *2017-06-19 13:59:25 [DEBUG] Ready to compute*
> *2017-06-19 13:59:25 [INFO] *** Finished: Compute MWCS ****
> *2017-06-19 13:59:26 [INFO] *** Starting: Compute MWCS ****
> *2017-06-19 13:59:26 [DEBUG] Ready to compute*
> *2017-06-19 13:59:26 [INFO] *** Finished: Compute MWCS ****
> *2017-06-19 13:59:27 [INFO] *** Starting: Compute MWCS ****
> *2017-06-19 13:59:27 [DEBUG] Ready to compute*
> *2017-06-19 13:59:27 [INFO] *** Finished: Compute MWCS ****
>
> Thanks for all your help!
>
> Greetings,
>
> Oscar
>
> On Fri, Jun 16, 2017 at 1:31 AM, Thomas Lecocq <thomas.lecocq at oma.be>
> wrote:
>
>> Oscar,
>>
>> it looks like you installed python with administrative rights:
>>
>> try
>>
>> sudo pip uninstall msnoise
>>
>> sudo pip install msnoise
>>
>>
>> Thomas
>>
>>
>> Le 15/06/2017 à 21:25, Oscar Alberto Castro Artola a écrit :
>>
>>> Dear Thomas,
>>>
>>> I tried *pip uninstall msnoise*, and I get this:
>>>
>>>
>>> Uninstalling msnoise-0+unknown:
>>>    /usr/local/anaconda/bin/msnoise
>>>
>>> /usr/local/anaconda/lib/python2.7/site-packages/msnoise-0+un
>>> known-py2.7.egg-info
>>>    /usr/local/anaconda/lib/python2.7/site-packages/msnoise/MWCS.py
>>>    /usr/local/anaconda/lib/python2.7/site-packages/msnoise/MWCS.pyc
>>>    /usr/local/anaconda/lib/python2.7/site-packages/msnoise/__init__.py
>>>    /usr/local/anaconda/lib/python2.7/site-packages/msnoise/__init__.pyc
>>>    /usr/local/anaconda/lib/python2.7/site-packages/msnoise/_version.py
>>>    /usr/local/anaconda/lib/python2.7/site-packages/msnoise/_version.pyc
>>>    /usr/local/anaconda/lib/python2.7/site-packages/msnoise/api.py
>>>    /usr/local/anaconda/lib/python2.7/site-packages/msnoise/api.pyc
>>>    /usr/local/anaconda/lib/python2.7/site-packages/msnoise/bugreport.py
>>>    /usr/local/anaconda/lib/python2.7/site-packages/msnoise/bugreport.pyc
>>>    /usr/local/anaconda/lib/python2.7/site-packages/msnoise/dat
>>> a_structures.py
>>>
>>> /usr/local/anaconda/lib/python2.7/site-packages/msnoise/data
>>> _structures.pyc
>>>    /usr/local/anaconda/lib/python2.7/site-packages/msnoise/default.py
>>>    /usr/local/anaconda/lib/python2.7/site-packages/msnoise/default.pyc
>>>    /usr/local/anaconda/lib/python2.7/site-packages/msnoise/msn
>>> oise_admin.py
>>>    /usr/local/anaconda/lib/python2.7/site-packages/msnoise/msn
>>> oise_admin.pyc
>>>
>>> /usr/local/anaconda/lib/python2.7/site-packages/msnoise/msno
>>> ise_table_def.py
>>>
>>> /usr/local/anaconda/lib/python2.7/site-packages/msnoise/msno
>>> ise_table_def.pyc
>>>    /usr/local/anaconda/lib/python2.7/site-packages/msnoise/myCorr.py
>>>    /usr/local/anaconda/lib/python2.7/site-packages/msnoise/myCorr.pyc
>>>    /usr/local/anaconda/lib/python2.7/site-packages/msnoise/plo
>>> ts/__init__.py
>>>    /usr/local/anaconda/lib/python2.7/site-packages/msnoise/plo
>>> ts/__init__.pyc
>>>    /usr/local/anaconda/lib/python2.7/site-packages/msnoise/plo
>>> ts/ccftime.py
>>>    /usr/local/anaconda/lib/python2.7/site-packages/msnoise/plo
>>> ts/ccftime.pyc
>>>
>>> /usr/local/anaconda/lib/python2.7/site-packages/msnoise/plot
>>> s/data_availability.py
>>>
>>> /usr/local/anaconda/lib/python2.7/site-packages/msnoise/plot
>>> s/data_availability.pyc
>>>    /usr/local/anaconda/lib/python2.7/site-packages/msnoise/plo
>>> ts/distance.py
>>>    /usr/local/anaconda/lib/python2.7/site-packages/msnoise/plo
>>> ts/distance.pyc
>>>    /usr/local/anaconda/lib/python2.7/site-packages/msnoise/plots/dtt.py
>>>    /usr/local/anaconda/lib/python2.7/site-packages/msnoise/plots/dtt.pyc
>>>    /usr/local/anaconda/lib/python2.7/site-packages/msnoise/plots/dvv.py
>>>    /usr/local/anaconda/lib/python2.7/site-packages/msnoise/plots/dvv.pyc
>>>
>>> /usr/local/anaconda/lib/python2.7/site-packages/msnoise/plot
>>> s/interferogram.py
>>>
>>> /usr/local/anaconda/lib/python2.7/site-packages/msnoise/plot
>>> s/interferogram.pyc
>>>    /usr/local/anaconda/lib/python2.7/site-packages/msnoise/plots/mwcs.py
>>>    /usr/local/anaconda/lib/python2.7/site-packages/msnoise/plo
>>> ts/mwcs.pyc
>>>
>>> /usr/local/anaconda/lib/python2.7/site-packages/msnoise/plot
>>> s/station_map.py
>>>
>>> /usr/local/anaconda/lib/python2.7/site-packages/msnoise/plot
>>> s/station_map.pyc
>>>    /usr/local/anaconda/lib/python2.7/site-packages/msnoise/plo
>>> ts/timing.py
>>>    /usr/local/anaconda/lib/python2.7/site-packages/msnoise/plo
>>> ts/timing.pyc
>>>    /usr/local/anaconda/lib/python2.7/site-packages/msnoise/s00
>>> 0installer.py
>>>    /usr/local/anaconda/lib/python2.7/site-packages/msnoise/s00
>>> 0installer.pyc
>>>
>>> /usr/local/anaconda/lib/python2.7/site-packages/msnoise/s001
>>> configurator.py
>>>
>>> /usr/local/anaconda/lib/python2.7/site-packages/msnoise/s001
>>> configurator.pyc
>>>
>>> /usr/local/anaconda/lib/python2.7/site-packages/msnoise/s002
>>> populate_station_table.py
>>>
>>> /usr/local/anaconda/lib/python2.7/site-packages/msnoise/s002
>>> populate_station_table.pyc
>>>    /usr/local/anaconda/lib/python2.7/site-packages/msnoise/s01
>>> scan_archive.py
>>>
>>> /usr/local/anaconda/lib/python2.7/site-packages/msnoise/s01s
>>> can_archive.pyc
>>>    /usr/local/anaconda/lib/python2.7/site-packages/msnoise/s02
>>> new_jobs.py
>>>    /usr/local/anaconda/lib/python2.7/site-packages/msnoise/s02
>>> new_jobs.pyc
>>>    /usr/local/anaconda/lib/python2.7/site-packages/msnoise/s03
>>> compute_cc.py
>>>    /usr/local/anaconda/lib/python2.7/site-packages/msnoise/s03
>>> compute_cc.pyc
>>>    /usr/local/anaconda/lib/python2.7/site-packages/msnoise/s04stack.py
>>>    /usr/local/anaconda/lib/python2.7/site-packages/msnoise/s04stack.pyc
>>>    /usr/local/anaconda/lib/python2.7/site-packages/msnoise/s05
>>> compute_mwcs.py
>>>
>>> /usr/local/anaconda/lib/python2.7/site-packages/msnoise/s05c
>>> ompute_mwcs.pyc
>>>    /usr/local/anaconda/lib/python2.7/site-packages/msnoise/s06
>>> compute_dtt.py
>>>    /usr/local/anaconda/lib/python2.7/site-packages/msnoise/s06
>>> compute_dtt.pyc
>>>
>>> /usr/local/anaconda/lib/python2.7/site-packages/msnoise/scri
>>> pts/__init__.py
>>>
>>> /usr/local/anaconda/lib/python2.7/site-packages/msnoise/scri
>>> pts/__init__.pyc
>>>    /usr/local/anaconda/lib/python2.7/site-packages/msnoise/scr
>>> ipts/msnoise.py
>>>
>>> /usr/local/anaconda/lib/python2.7/site-packages/msnoise/scri
>>> pts/msnoise.pyc
>>>
>>> /usr/local/anaconda/lib/python2.7/site-packages/msnoise/stat
>>> ic/admin/msnoise.css
>>>
>>> /usr/local/anaconda/lib/python2.7/site-packages/msnoise/stat
>>> ic/admin/msnoise.png
>>>
>>> /usr/local/anaconda/lib/python2.7/site-packages/msnoise/stat
>>> ic/admin/style.css
>>>    /usr/local/anaconda/lib/python2.7/site-packages/msnoise/stretch.py
>>>    /usr/local/anaconda/lib/python2.7/site-packages/msnoise/stretch.pyc
>>>
>>> /usr/local/anaconda/lib/python2.7/site-packages/msnoise/temp
>>> lates/admin/about.html
>>>
>>> /usr/local/anaconda/lib/python2.7/site-packages/msnoise/temp
>>> lates/admin/bugreport.html
>>>
>>> /usr/local/anaconda/lib/python2.7/site-packages/msnoise/temp
>>> lates/admin/data_availability.html
>>>
>>> /usr/local/anaconda/lib/python2.7/site-packages/msnoise/temp
>>> lates/admin/index.html
>>>
>>> /usr/local/anaconda/lib/python2.7/site-packages/msnoise/temp
>>> lates/admin/interferogram.html
>>>
>>> /usr/local/anaconda/lib/python2.7/site-packages/msnoise/temp
>>> lates/admin/master.html
>>>
>>> /usr/local/anaconda/lib/python2.7/site-packages/msnoise/temp
>>> lates/admin/model/edit-config.html
>>>
>>> /usr/local/anaconda/lib/python2.7/site-packages/msnoise/temp
>>> lates/admin/results.html
>>>
>>> /usr/local/anaconda/lib/python2.7/site-packages/msnoise/temp
>>> lates/index.html
>>>    /usr/local/anaconda/lib/python2.7/site-packages/msnoise/tes
>>> t/__init__.py
>>>    /usr/local/anaconda/lib/python2.7/site-packages/msnoise/tes
>>> t/__init__.pyc
>>>
>>> /usr/local/anaconda/lib/python2.7/site-packages/msnoise/test
>>> /data/2010/UV05/HHZ.D/YA.UV05.00.HHZ.D.2010.244
>>>
>>> /usr/local/anaconda/lib/python2.7/site-packages/msnoise/test
>>> /data/2010/UV06/HHZ.D/YA.UV06.00.HHZ.D.2010.244
>>>
>>> /usr/local/anaconda/lib/python2.7/site-packages/msnoise/test
>>> /data/2010/UV10/HHZ.D/YA.UV10.00.HHZ.D.2010.244
>>>
>>> /usr/local/anaconda/lib/python2.7/site-packages/msnoise/test
>>> /extra/stations.csv
>>>    /usr/local/anaconda/lib/python2.7/site-packages/msnoise/tes
>>> t/run_tests.sh
>>>    /usr/local/anaconda/lib/python2.7/site-packages/msnoise/test/tests.py
>>>    /usr/local/anaconda/lib/python2.7/site-packages/msnoise/tes
>>> t/tests.pyc
>>>    /usr/local/anaconda/lib/python2.7/site-packages/msnoise/whiten.py
>>>    /usr/local/anaconda/lib/python2.7/site-packages/msnoise/whiten.pyc
>>>    /usr/local/anaconda/lib/python2.7/site-packages/msnoise/whitenAM.py
>>>    /usr/local/anaconda/lib/python2.7/site-packages/msnoise/whitenAM.pyc
>>> Proceed (y/n)? y
>>> Exception:
>>> Traceback (most recent call last):
>>>    File
>>> "/usr/local/anaconda/lib/python2.7/site-packages/pip/basecommand.py",
>>> line
>>> 215, in main
>>>      status = self.run(options, args)
>>>    File
>>> "/usr/local/anaconda/lib/python2.7/site-packages/pip/command
>>> s/uninstall.py",
>>> line 76, in run
>>>      requirement_set.uninstall(auto_confirm=options.yes)
>>>    File
>>> "/usr/local/anaconda/lib/python2.7/site-packages/pip/req/req_set.py",
>>> line
>>> 346, in uninstall
>>>      req.uninstall(auto_confirm=auto_confirm)
>>>    File
>>> "/usr/local/anaconda/lib/python2.7/site-packages/pip/req/req
>>> _install.py",
>>> line 754, in uninstall
>>>      paths_to_remove.remove(auto_confirm)
>>>    File
>>> "/usr/local/anaconda/lib/python2.7/site-packages/pip/req/req
>>> _uninstall.py",
>>> line 115, in remove
>>>      renames(path, new_path)
>>>    File
>>> "/usr/local/anaconda/lib/python2.7/site-packages/pip/utils/__init__.py",
>>> line 267, in renames
>>>      shutil.move(old, new)
>>>    File "/usr/local/anaconda/lib/python2.7/shutil.py", line 303, in move
>>>      os.unlink(src)
>>> OSError: [Errno 13] Permission denied: '/usr/local/anaconda/bin/msnoise'
>>>
>>> Again, thanks for your help!
>>>
>>> Cheers,
>>>
>>> Oscar
>>>
>>> On Thu, Jun 15, 2017 at 11:43 AM, Thomas Lecocq <
>>> Thomas.Lecocq at seismology.be
>>>
>>>> wrote:
>>>> Oscar,
>>>>
>>>> just try:
>>>>
>>>> pip uninstall msnoise
>>>>
>>>> and then
>>>>
>>>> pip install msnoise
>>>>
>>>>
>>>> Cheers,
>>>>
>>>> Tom
>>>>
>>>>
>>>> On 15/06/2017 18:10, Oscar Alberto Castro Artola wrote:
>>>>
>>>> Dear Lukas,
>>>>>
>>>>> I have tried: *pip install msnoise -U,* but I get this error. Do you
>>>>> know
>>>>> what the problem is?
>>>>>
>>>>> *Collecting msnoise*
>>>>> *Collecting setuptools (from msnoise)*
>>>>> *  Using cached setuptools-36.0.1-py2.py3-none-any.whl*
>>>>> *Collecting pymysql (from msnoise)*
>>>>> *  Using cached PyMySQL-0.7.11-py2.py3-none-any.whl*
>>>>> *Collecting numpy>=1.0 (from msnoise)*
>>>>> *  Downloading numpy-1.13.0-cp27-cp27mu-manylinux1_x86_64.whl
>>>>> (16.6MB)*
>>>>> *    100% |████████████████████████████████| 16.6MB 10kB/s *
>>>>> *Collecting matplotlib (from msnoise)*
>>>>> *  Using cached matplotlib-2.0.2-cp27-cp27mu-manylinux1_x86_64.whl*
>>>>> *Requirement already up-to-date: scipy in
>>>>> /usr/local/anaconda/lib/python2.7/site-packages (from msnoise)*
>>>>> *Collecting jinja2 (from msnoise)*
>>>>> *  Using cached Jinja2-2.9.6-py2.py3-none-any.whl*
>>>>> *Requirement already up-to-date: wtforms in
>>>>> /usr/local/anaconda/lib/python2.7/site-packages (from msnoise)*
>>>>> *Collecting pandas (from msnoise)*
>>>>> *  Using cached pandas-0.20.2-cp27-cp27mu-manylinux1_x86_64.whl*
>>>>> *Collecting flask (from msnoise)*
>>>>> *  Using cached Flask-0.12.2-py2.py3-none-any.whl*
>>>>> *Collecting sqlalchemy (from msnoise)*
>>>>> *Collecting folium (from msnoise)*
>>>>> *  Using cached folium-0.3.0-py2-none-any.whl*
>>>>> *Collecting click (from msnoise)*
>>>>> *  Using cached click-6.7-py2.py3-none-any.whl*
>>>>> *Collecting flask-admin (from msnoise)*
>>>>> *Collecting obspy (from msnoise)*
>>>>> *Collecting flask-wtf (from msnoise)*
>>>>> *  Using cached Flask_WTF-0.14.2-py2.py3-none-any.whl*
>>>>> *Collecting markdown (from msnoise)*
>>>>> *Requirement already up-to-date: python-dateutil in
>>>>> /usr/local/anaconda/lib/python2.7/site-packages (from
>>>>> matplotlib->msnoise)*
>>>>> *Requirement already up-to-date: subprocess32 in
>>>>> /usr/local/anaconda/lib/python2.7/site-packages (from
>>>>> matplotlib->msnoise)*
>>>>> *Requirement already up-to-date: cycler>=0.10 in
>>>>> /usr/local/anaconda/lib/python2.7/site-packages/cycler-0.10.
>>>>> 0-py2.7.egg
>>>>> (from matplotlib->msnoise)*
>>>>> *Requirement already up-to-date: six>=1.10 in
>>>>> /usr/local/anaconda/lib/python2.7/site-packages (from
>>>>> matplotlib->msnoise)*
>>>>> *Requirement already up-to-date: pytz in
>>>>> /usr/local/anaconda/lib/python2.7/site-packages (from
>>>>> matplotlib->msnoise)*
>>>>> *Requirement already up-to-date: functools32 in
>>>>> /usr/local/anaconda/lib/python2.7/site-packages (from
>>>>> matplotlib->msnoise)*
>>>>> *Requirement already up-to-date: pyparsing!=2.0.4,!=2.1.2,!=2.1
>>>>> .6,>=1.5.6
>>>>> in /usr/local/anaconda/lib/python2.7/site-packages (from
>>>>> matplotlib->msnoise)*
>>>>> *Collecting MarkupSafe>=0.23 (from jinja2->msnoise)*
>>>>> *Collecting Werkzeug>=0.7 (from flask->msnoise)*
>>>>> *  Using cached Werkzeug-0.12.2-py2.py3-none-any.whl*
>>>>> *Requirement already up-to-date: itsdangerous>=0.21 in
>>>>> /usr/local/anaconda/lib/python2.7/site-packages (from flask->msnoise)*
>>>>> *Collecting branca (from folium->msnoise)*
>>>>> *  Using cached branca-0.2.0-py2-none-any.whl*
>>>>> *Requirement already up-to-date: future>=0.12.4 in
>>>>> /usr/local/anaconda/lib/python2.7/site-packages (from obspy->msnoise)*
>>>>> *Collecting requests (from obspy->msnoise)*
>>>>> *  Downloading requests-2.18.1-py2.py3-none-any.whl (88kB)*
>>>>> *    100% |████████████████████████████████| 92kB 4.0MB/s *
>>>>> *Requirement already up-to-date: decorator in
>>>>> /usr/local/anaconda/lib/python2.7/site-packages (from obspy->msnoise)*
>>>>> *Collecting lxml (from obspy->msnoise)*
>>>>> *  Using cached lxml-3.8.0-cp27-cp27mu-manylinux1_x86_64.whl*
>>>>> *Collecting chardet<3.1.0,>=3.0.2 (from requests->obspy->msnoise)*
>>>>> *  Downloading chardet-3.0.4-py2.py3-none-any.whl (133kB)*
>>>>> *    100% |████████████████████████████████| 143kB 2.5MB/s *
>>>>> *Requirement already up-to-date: certifi>=2017.4.17 in
>>>>> /usr/local/anaconda/lib/python2.7/site-packages (from
>>>>> requests->obspy->msnoise)*
>>>>> *Collecting idna<2.6,>=2.5 (from requests->obspy->msnoise)*
>>>>> *  Using cached idna-2.5-py2.py3-none-any.whl*
>>>>> *Collecting urllib3<1.22,>=1.21.1 (from requests->obspy->msnoise)*
>>>>> *  Using cached urllib3-1.21.1-py2.py3-none-any.whl*
>>>>> *Installing collected packages: setuptools, pymysql, numpy, matplotlib,
>>>>> MarkupSafe, jinja2, pandas, click, Werkzeug, flask, sqlalchemy, branca,
>>>>> folium, flask-admin, chardet, idna, urllib3, requests, lxml, obspy,
>>>>> flask-wtf, markdown, msnoise*
>>>>> *  Found existing installation: setuptools 33.1.1.post20170320*
>>>>> *    Uninstalling setuptools-33.1.1.post20170320:*
>>>>> *Exception:*
>>>>> *Traceback (most recent call last):*
>>>>> *  File
>>>>> "/usr/local/anaconda/lib/python2.7/site-packages/pip/basecommand.py",
>>>>> line
>>>>> 215, in main*
>>>>> *    status = self.run(options, args)*
>>>>> *  File
>>>>> "/usr/local/anaconda/lib/python2.7/site-packages/pip/command
>>>>> s/install.py",
>>>>> line 342, in run*
>>>>> *    prefix=options.prefix_path,*
>>>>> *  File
>>>>> "/usr/local/anaconda/lib/python2.7/site-packages/pip/req/req_set.py",
>>>>> line
>>>>> 778, in install*
>>>>> *    requirement.uninstall(auto_confirm=True)*
>>>>> *  File
>>>>> "/usr/local/anaconda/lib/python2.7/site-packages/pip/req/req
>>>>> _install.py",
>>>>> line 754, in uninstall*
>>>>> *    paths_to_remove.remove(auto_confirm)*
>>>>> *  File
>>>>> "/usr/local/anaconda/lib/python2.7/site-packages/pip/req/
>>>>> req_uninstall.py",
>>>>> line 115, in remove*
>>>>> *    renames(path, new_path)*
>>>>> *  File
>>>>> "/usr/local/anaconda/lib/python2.7/site-packages/pip/utils/_
>>>>> _init__.py",
>>>>> line 267, in renames*
>>>>> *    shutil.move(old, new)*
>>>>> *  File "/usr/local/anaconda/lib/python2.7/shutil.py", line 303, in
>>>>> move*
>>>>> *    os.unlink(src)*
>>>>> *OSError: [Errno 13] Permission denied:
>>>>> '/usr/local/anaconda/bin/easy_install'*
>>>>>
>>>>>
>>>>> Thank you very much for your time!
>>>>>
>>>>> Greetings,
>>>>>
>>>>> Oscar
>>>>>
>>>>> On Tue, Jun 6, 2017 at 1:42 AM, Lukas Preiswerk <
>>>>> preiswerk at vaw.baug.ethz.ch>
>>>>> wrote:
>>>>>
>>>>> Oscar,
>>>>>
>>>>>> I think “pip install msnoise -U” should do the trick (-U is for
>>>>>> —upgrade).
>>>>>>
>>>>>> Lukas
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>> 2017-06-02 18:55 GMT+02:00 Oscar Alberto Castro Artola
>>>>>> <oscar.cas.art at gmail.com>:
>>>>>>
>>>>>> Dear Christos and Lukas,
>>>>>>>
>>>>>>> first of all thanks for you help! I really apreciate it!
>>>>>>>
>>>>>>> Christos: I have a server with 40 cores, so I think the *-t 20* flag
>>>>>>> is
>>>>>>> working fine!
>>>>>>>
>>>>>>> Lukas: I tried to do a *pip install msnoise*, but I don't think it is
>>>>>>> actually upgrading MSNoise, the output is:
>>>>>>>
>>>>>>> *Requirement already satisfied: msnoise in
>>>>>>> /usr/local/anaconda/lib/python2.7/site-packages*
>>>>>>> *Requirement already satisfied: setuptools in
>>>>>>> /usr/local/anaconda/lib/python2.7/site-packages (from msnoise)*
>>>>>>> *Requirement already satisfied: numpy>=1.0 in
>>>>>>> /usr/local/anaconda/lib/python2.7/site-packages (from msnoise)*
>>>>>>> *Requirement already satisfied: scipy in
>>>>>>> /usr/local/anaconda/lib/python2.7/site-packages (from msnoise)*
>>>>>>> *Requirement already satisfied: pandas in
>>>>>>> /usr/local/anaconda/lib/python2.7/site-packages (from msnoise)*
>>>>>>> *Requirement already satisfied: matplotlib in
>>>>>>> /usr/local/anaconda/lib/python2.7/site-packages (from msnoise)*
>>>>>>> *Requirement already satisfied: statsmodels in
>>>>>>> /usr/local/anaconda/lib/python2.7/site-packages (from msnoise)*
>>>>>>> *Requirement already satisfied: sqlalchemy in
>>>>>>> /usr/local/anaconda/lib/python2.7/site-packages (from msnoise)*
>>>>>>> *Requirement already satisfied: obspy in
>>>>>>> /usr/local/anaconda/lib/python2.7/site-packages (from msnoise)*
>>>>>>> *Requirement already satisfied: click in
>>>>>>> /usr/local/anaconda/lib/python2.7/site-packages/click-4.0-py2.7.egg
>>>>>>>
>>>>>>> (from
>>>>>>
>>>>>> msnoise)*
>>>>>>> *Requirement already satisfied: pymysql in
>>>>>>> /usr/local/anaconda/lib/python2.7/site-packages (from msnoise)*
>>>>>>> *Requirement already satisfied: flask in
>>>>>>> /usr/local/anaconda/lib/python2.7/site-packages (from msnoise)*
>>>>>>> *Requirement already satisfied: flask-admin in
>>>>>>> /usr/local/anaconda/lib/python2.7/site-packages (from msnoise)*
>>>>>>> *Requirement already satisfied: multiprocessing_logging in
>>>>>>> /usr/local/anaconda/lib/python2.7/site-packages (from msnoise)*
>>>>>>> *Requirement already satisfied: markdown in
>>>>>>> /usr/local/anaconda/lib/python2.7/site-packages (from msnoise)*
>>>>>>> *Requirement already satisfied: folium in
>>>>>>> /usr/local/anaconda/lib/python2.7/site-packages (from msnoise)*
>>>>>>> *Requirement already satisfied: six>=1.10 in
>>>>>>> /usr/local/anaconda/lib/python2.7/site-packages (from
>>>>>>>
>>>>>>> matplotlib->msnoise)*
>>>>>>
>>>>>> *Requirement already satisfied: python-dateutil in
>>>>>>> /usr/local/anaconda/lib/python2.7/site-packages (from
>>>>>>>
>>>>>>> matplotlib->msnoise)*
>>>>>>
>>>>>> *Requirement already satisfied: functools32 in
>>>>>>> /usr/local/anaconda/lib/python2.7/site-packages (from
>>>>>>>
>>>>>>> matplotlib->msnoise)*
>>>>>>
>>>>>> *Requirement already satisfied: subprocess32 in
>>>>>>> /usr/local/anaconda/lib/python2.7/site-packages (from
>>>>>>>
>>>>>>> matplotlib->msnoise)*
>>>>>>
>>>>>> *Requirement already satisfied: pytz in
>>>>>>> /usr/local/anaconda/lib/python2.7/site-packages (from
>>>>>>>
>>>>>>> matplotlib->msnoise)*
>>>>>>
>>>>>> *Requirement already satisfied: cycler>=0.10 in
>>>>>>> /usr/local/anaconda/lib/python2.7/site-packages/cycler-0.10.
>>>>>>> 0-py2.7.egg
>>>>>>> (from matplotlib->msnoise)*
>>>>>>> *Requirement already satisfied: pyparsing!=2.0.4,!=2.1.2,!=2.1
>>>>>>> .6,>=1.5.6
>>>>>>>
>>>>>>> in
>>>>>>
>>>>>> /usr/local/anaconda/lib/python2.7/site-packages (from
>>>>>>>
>>>>>>> matplotlib->msnoise)*
>>>>>>
>>>>>> *Requirement already satisfied: future>=0.12.4 in
>>>>>>> /usr/local/anaconda/lib/python2.7/site-packages (from
>>>>>>> obspy->msnoise)*
>>>>>>> *Requirement already satisfied: lxml in
>>>>>>> /usr/local/anaconda/lib/python2.7/site-packages (from
>>>>>>> obspy->msnoise)*
>>>>>>> *Requirement already satisfied: decorator in
>>>>>>> /usr/local/anaconda/lib/python2.7/site-packages (from
>>>>>>> obspy->msnoise)*
>>>>>>> *Requirement already satisfied: requests in
>>>>>>> /usr/local/anaconda/lib/python2.7/site-packages (from
>>>>>>> obspy->msnoise)*
>>>>>>> *Requirement already satisfied: wtforms in
>>>>>>> /usr/local/anaconda/lib/python2.7/site-packages (from
>>>>>>>
>>>>>>> flask-admin->msnoise)*
>>>>>>
>>>>>> *Requirement already satisfied: Jinja2 in
>>>>>>> /usr/local/anaconda/lib/python2.7/site-packages (from
>>>>>>> folium->msnoise)*
>>>>>>>
>>>>>>> This is the second time I do *msnoise -t 20 compute_mwcs*, last time
>>>>>>> it
>>>>>>> worked fine but I needed to change *dtt_lag* to "dynamic". So when I
>>>>>>>
>>>>>>> tried
>>>>>>
>>>>>> to rerun* msnoise -t 20 compute_mwcs* with the new parameter this
>>>>>>> error
>>>>>>> message appears. What I've done is run the process in the morning,
>>>>>>> all
>>>>>>>
>>>>>>> day
>>>>>>
>>>>>> it works fine, but the next morning I always find that error message.
>>>>>>>
>>>>>>> Thanks again!
>>>>>>>
>>>>>>> Oscar
>>>>>>>
>>>>>>> On Fri, Jun 2, 2017 at 8:39 AM, Lukas Preiswerk <
>>>>>>>
>>>>>>> preiswerk at vaw.baug.ethz.ch>
>>>>>>
>>>>>> wrote:
>>>>>>>
>>>>>>> Hi Oscar
>>>>>>>
>>>>>>>> The problem is that “MySQL server has gone away”, so it can’t update
>>>>>>>> the database after finishing the MWCS job. We fixed this in the
>>>>>>>> newest
>>>>>>>> version, so you should indeed update.
>>>>>>>>
>>>>>>>> I think that updating is done by “pip install msnoise”, and then for
>>>>>>>> each project “msnoise upgrade_db” (see the release notes
>>>>>>>> http://msnoise.org/doc/releasenotes/msnoise-1.5.html ). Tom can
>>>>>>>> clarify if this method I just described is actually the way to go…
>>>>>>>>
>>>>>>>> Best, Lukas
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>> 2017-06-02 15:20 GMT+02:00 Christos Evangelidis <cevan at noa.gr>:
>>>>>>>>
>>>>>>>> Dear Oscar,
>>>>>>>>>
>>>>>>>>> Can you really run 20 instances of the code (-t 20) ? I find the
>>>>>>>>> -t 20
>>>>>>>>> rather high, but your machine might support it..
>>>>>>>>>
>>>>>>>>> Regards,
>>>>>>>>>
>>>>>>>>> Christos
>>>>>>>>>
>>>>>>>>> Στις 1 Ιουν 2017 6:01 μμ, ο χρήστης "Oscar Alberto Castro Artola" <
>>>>>>>>> oscar.cas.art at gmail.com> έγραψε:
>>>>>>>>>
>>>>>>>>> Hello,
>>>>>>>>>
>>>>>>>>> I have 10 years of data for 13 stations, I have computed the CCF
>>>>>>>>> and
>>>>>>>>>
>>>>>>>>> now
>>>>>>>>
>>>>>>> it
>>>>>>>
>>>>>>>> is turn to compute the MWCS. When I do *msnoise -t 20 compute_mwcs
>>>>>>>>>
>>>>>>>>> *this
>>>>>>>>
>>>>>>> error appears:
>>>>>>>
>>>>>>>> *Process Process-4:*
>>>>>>>>> *Traceback (most recent call last):*
>>>>>>>>> *  File "/usr/local/anaconda/lib/python2.7/multiprocessing/
>>>>>>>>>
>>>>>>>>> process.py",
>>>>>>>>
>>>>>>> line 258, in _bootstrap*
>>>>>>>
>>>>>>>> *    self.run()*
>>>>>>>>> *  File "/usr/local/anaconda/lib/python2.7/multiprocessing/
>>>>>>>>>
>>>>>>>>> process.py",
>>>>>>>>
>>>>>>> line 114, in run*
>>>>>>>
>>>>>>>> *    self._target(*self._args, **self._kwargs)*
>>>>>>>>> *  File
>>>>>>>>> "/usr/local/anaconda/lib/python2.7/site-packages/msnoise/
>>>>>>>>> s05compute_mwcs.py",
>>>>>>>>> line 150, in main*
>>>>>>>>> *    update_job(db, day, pair, jobtype='DTT', flag='D')*
>>>>>>>>> *  File "/usr/local/anaconda/lib/python2.7/site-packages/
>>>>>>>>>
>>>>>>>>> msnoise/api.py",
>>>>>>>>
>>>>>>>> line 615, in update_job*
>>>>>>>>> *    job = session.query(Job).filter(Job.day ==
>>>>>>>>> day).filter(Job.pair
>>>>>>>>>
>>>>>>>>> ==
>>>>>>>>
>>>>>>> pair).filter(Job.jobtype == jobtype).first()*
>>>>>>>
>>>>>>>> *  File
>>>>>>>>> "/usr/local/anaconda/lib/python2.7/site-packages/
>>>>>>>>>
>>>>>>>>> sqlalchemy/orm/query.py",
>>>>>>>>
>>>>>>>> line 2755, in first*
>>>>>>>>> *    ret = list(self[0:1])*
>>>>>>>>> *  File
>>>>>>>>> "/usr/local/anaconda/lib/python2.7/site-packages/
>>>>>>>>>
>>>>>>>>> sqlalchemy/orm/query.py",
>>>>>>>>
>>>>>>>> line 2547, in __getitem__*
>>>>>>>>> *    return list(res)*
>>>>>>>>> *  File
>>>>>>>>> "/usr/local/anaconda/lib/python2.7/site-packages/
>>>>>>>>>
>>>>>>>>> sqlalchemy/orm/query.py",
>>>>>>>>
>>>>>>>> line 2855, in __iter__*
>>>>>>>>> *    return self._execute_and_instances(context)*
>>>>>>>>> *  File
>>>>>>>>> "/usr/local/anaconda/lib/python2.7/site-packages/
>>>>>>>>>
>>>>>>>>> sqlalchemy/orm/query.py",
>>>>>>>>
>>>>>>>> line 2878, in _execute_and_instances*
>>>>>>>>> *    result = conn.execute(querycontext.statement, self._params)*
>>>>>>>>> *  File
>>>>>>>>> "/usr/local/anaconda/lib/python2.7/site-packages/
>>>>>>>>>
>>>>>>>>> sqlalchemy/engine/base.py",
>>>>>>>>
>>>>>>>> line 945, in execute*
>>>>>>>>> *    return meth(self, multiparams, params)*
>>>>>>>>> *  File
>>>>>>>>> "/usr/local/anaconda/lib/python2.7/site-packages/sqlalchemy/
>>>>>>>>> sql/elements.py",
>>>>>>>>> line 263, in _execute_on_connection*
>>>>>>>>> *    return connection._execute_clauseelement(self, multiparams,
>>>>>>>>>
>>>>>>>>> params)*
>>>>>>>>
>>>>>>>> *  File
>>>>>>>>> "/usr/local/anaconda/lib/python2.7/site-packages/
>>>>>>>>>
>>>>>>>>> sqlalchemy/engine/base.py",
>>>>>>>>
>>>>>>>> line 1053, in _execute_clauseelement*
>>>>>>>>> *    compiled_sql, distilled_params*
>>>>>>>>> *  File
>>>>>>>>> "/usr/local/anaconda/lib/python2.7/site-packages/
>>>>>>>>>
>>>>>>>>> sqlalchemy/engine/base.py",
>>>>>>>>
>>>>>>>> line 1189, in _execute_context*
>>>>>>>>> *    context)*
>>>>>>>>> *  File
>>>>>>>>> "/usr/local/anaconda/lib/python2.7/site-packages/
>>>>>>>>>
>>>>>>>>> sqlalchemy/engine/base.py",
>>>>>>>>
>>>>>>>> line 1402, in _handle_dbapi_exception*
>>>>>>>>> *    exc_info*
>>>>>>>>> *  File
>>>>>>>>> "/usr/local/anaconda/lib/python2.7/site-packages/
>>>>>>>>>
>>>>>>>>> sqlalchemy/util/compat.py",
>>>>>>>>
>>>>>>>> line 203, in raise_from_cause*
>>>>>>>>> *    reraise(type(exception), exception, tb=exc_tb, cause=cause)*
>>>>>>>>> *  File
>>>>>>>>> "/usr/local/anaconda/lib/python2.7/site-packages/
>>>>>>>>>
>>>>>>>>> sqlalchemy/engine/base.py",
>>>>>>>>
>>>>>>>> line 1182, in _execute_context*
>>>>>>>>> *    context)*
>>>>>>>>> *  File
>>>>>>>>> "/usr/local/anaconda/lib/python2.7/site-packages/sqlalchemy/
>>>>>>>>> engine/default.py",
>>>>>>>>> line 470, in do_execute*
>>>>>>>>> *    cursor.execute(statement, parameters)*
>>>>>>>>> *  File
>>>>>>>>> "/usr/local/anaconda/lib/python2.7/site-packages/pymysql/cur
>>>>>>>>> sors.py",
>>>>>>>>>
>>>>>>>>> line
>>>>>>>>
>>>>>>>> 158, in execute*
>>>>>>>>> *    result = self._query(query)*
>>>>>>>>> *  File
>>>>>>>>> "/usr/local/anaconda/lib/python2.7/site-packages/pymysql/cur
>>>>>>>>> sors.py",
>>>>>>>>>
>>>>>>>>> line
>>>>>>>>
>>>>>>>> 308, in _query*
>>>>>>>>> *    conn.query(q)*
>>>>>>>>> *  File
>>>>>>>>> "/usr/local/anaconda/lib/python2.7/site-packages/
>>>>>>>>>
>>>>>>>>> pymysql/connections.py",
>>>>>>>>
>>>>>>>> line 819, in query*
>>>>>>>>> *    self._execute_command(COMMAND.COM_QUERY, sql)*
>>>>>>>>> *  File
>>>>>>>>> "/usr/local/anaconda/lib/python2.7/site-packages/
>>>>>>>>>
>>>>>>>>> pymysql/connections.py",
>>>>>>>>
>>>>>>>> line 1037, in _execute_command*
>>>>>>>>> *    self._write_bytes(packet)*
>>>>>>>>> *  File
>>>>>>>>> "/usr/local/anaconda/lib/python2.7/site-packages/
>>>>>>>>>
>>>>>>>>> pymysql/connections.py",
>>>>>>>>
>>>>>>>> line 989, in _write_bytes*
>>>>>>>>> *    raise err.OperationalError(2006, "MySQL server has gone away
>>>>>>>>>
>>>>>>>>> (%r)" %
>>>>>>>>
>>>>>>> (e,))*
>>>>>>>
>>>>>>>> *OperationalError: (pymysql.err.OperationalError) (2006, "MySQL
>>>>>>>>> server
>>>>>>>>>
>>>>>>>>> has
>>>>>>>>
>>>>>>>> gone away (error(32, 'Broken pipe'))") [SQL: u'SELECT jobs.ref AS
>>>>>>>>>
>>>>>>>>> jobs_ref,
>>>>>>>>
>>>>>>>> jobs.day AS jobs_day, jobs.pair AS jobs_pair, jobs.jobtype AS
>>>>>>>>>
>>>>>>>>> jobs_jobtype,
>>>>>>>>
>>>>>>>> jobs.flag AS jobs_flag, jobs.lastmod AS jobs_lastmod \nFROM jobs
>>>>>>>>>
>>>>>>>>> \nWHERE
>>>>>>>>
>>>>>>> jobs.day = %(day_1)s AND jobs.pair = %(pair_1)s AND jobs.jobtype =
>>>>>>>
>>>>>>>> %(jobtype_1)s \n LIMIT %(param_1)s'] [parameters: {u'param_1': 1,
>>>>>>>>>
>>>>>>>>> u'day_1':
>>>>>>>>
>>>>>>>> '2009-02-16', u'jobtype_1': 'DTT', u'pair_1': 'IG.ARIG:IG.MOIG'}]*
>>>>>>>>>
>>>>>>>>> At the beginning everything works fine, but because it takes a long
>>>>>>>>>
>>>>>>>>> time
>>>>>>>>
>>>>>>> to
>>>>>>>
>>>>>>>> make the computation (around 5 days), every time  that I come back
>>>>>>>>> to
>>>>>>>>>
>>>>>>>>> see
>>>>>>>>
>>>>>>> the results this happens. I am working with MSNoise 1.4 and I don't
>>>>>>>
>>>>>>>> know
>>>>>>>>
>>>>>>> how to upgrade to MSNoise 1.5.
>>>>>>>
>>>>>>>> Does anyone know how to fix this?
>>>>>>>>>
>>>>>>>>> Thanks in advance!
>>>>>>>>>
>>>>>>>>> Oscar
>>>>>>>>> _______________________________________________
>>>>>>>>> MSNoise mailing list
>>>>>>>>> MSNoise at mailman-as.oma.be
>>>>>>>>> http://mailman-as.oma.be/mailman/listinfo/msnoise
>>>>>>>>> _______________________________________________
>>>>>>>>> MSNoise mailing list
>>>>>>>>> MSNoise at mailman-as.oma.be
>>>>>>>>> http://mailman-as.oma.be/mailman/listinfo/msnoise
>>>>>>>>>
>>>>>>>>> _______________________________________________
>>>>>>>> MSNoise mailing list
>>>>>>>> MSNoise at mailman-as.oma.be
>>>>>>>> http://mailman-as.oma.be/mailman/listinfo/msnoise
>>>>>>>>
>>>>>>>> _______________________________________________
>>>>>>>>
>>>>>>> MSNoise mailing list
>>>>>>> MSNoise at mailman-as.oma.be
>>>>>>> http://mailman-as.oma.be/mailman/listinfo/msnoise
>>>>>>>
>>>>>>> _______________________________________________
>>>>>> MSNoise mailing list
>>>>>> MSNoise at mailman-as.oma.be
>>>>>> http://mailman-as.oma.be/mailman/listinfo/msnoise
>>>>>>
>>>>>> _______________________________________________
>>>>>>
>>>>> MSNoise mailing list
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>>>>> http://mailman-as.oma.be/mailman/listinfo/msnoise
>>>>>
>>>>>
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