[MSNoise] Stack_error

Wed Apr 4 13:37:23 UTC 2018

Hello,

I run stack command and received following errors.
Please, have a look.
I tried to fix it by editing 'my.cnf' file as below

 The MySQL database server configuration file.
#
# You can copy this to one of:
# - "/etc/mysql/my.cnf" to set global options,
# - "~/.my.cnf" to set user-specific options.
#
# One can use all long options that the program supports.
# Run program with --help to get a list of available options and with
# --print-defaults to see which it would actually understand and use.
#
# For explanations see
# http://dev.mysql.com/doc/mysql/en/server-system-variables.html

#
# * IMPORTANT: Additional settings that can override those from this file!
#   The files must end with '.cnf', otherwise they'll be ignored.
#

!includedir /etc/mysql/conf.d/
!includedir /etc/mysql/mysql.conf.d/
[global]
sql_mode = TRADITIONAL

Stack error!

yawar at yawar-Vostro-5470:~/anaconda3/bin$ msnoise stack -r -m -i 10
Lets STACK !
2018-04-03 10:59:04 [DEBUG] Starting the ref stack
[]
2018-04-03 10:59:04 [DEBUG] Processing DF01_BHE:DF01_BHE-ZZ-1
Traceback (most recent call last):
  File "/home/yawar/anaconda3/lib/python3.5/site-packages/sqlalchemy/engine/base.py",
line 1139, in _execute_context
    context)
  File "/home/yawar/anaconda3/lib/python3.5/site-packages/sqlalchemy/engine/default.py",
line 450, in do_execute
    cursor.execute(statement, parameters)
  File "/home/yawar/anaconda3/lib/python3.5/site-packages/pymysql/cursors.py",
line 166, in execute
    result = self._query(query)
  File "/home/yawar/anaconda3/lib/python3.5/site-packages/pymysql/cursors.py",
line 322, in _query
    conn.query(q)
  File "/home/yawar/anaconda3/lib/python3.5/site-packages/pymysql/connections.py",
line 835, in query
    self._affected_rows = self._read_query_result(unbuffered=unbuffered)
  File "/home/yawar/anaconda3/lib/python3.5/site-packages/pymysql/connections.py",
line 1019, in _read_query_result
    result.read()
  File "/home/yawar/anaconda3/lib/python3.5/site-packages/pymysql/connections.py",
line 1302, in read
    first_packet = self.connection._read_packet()
  File "/home/yawar/anaconda3/lib/python3.5/site-packages/pymysql/connections.py",
line 981, in _read_packet
    packet.check_error()
  File "/home/yawar/anaconda3/lib/python3.5/site-packages/pymysql/connections.py",
line 393, in check_error
    err.raise_mysql_exception(self._data)
  File "/home/yawar/anaconda3/lib/python3.5/site-packages/pymysql/err.py",
line 107, in raise_mysql_exception
    raise errorclass(errno, errval)
pymysql.err.InternalError: (1055, "Expression #1 of SELECT list is not in
GROUP BY clause and contains nonaggregated column 'msnoise.jobs.ref' which
is not functionally dependent on columns in GROUP BY clause; this is
incompatible with sql_mode=only_full_group_by")

The above exception was the direct cause of the following exception:

Traceback (most recent call last):
  File "/home/yawar/anaconda3/bin/msnoise", line 11, in <module>
    sys.exit(run())
  File "/home/yawar/anaconda3/lib/python3.5/site-packages/msnoise/scripts/msnoise.py",
line 614, in run
    cli(obj={})
  File "/home/yawar/anaconda3/lib/python3.5/site-packages/click/core.py",
line 716, in __call__
    return self.main(*args, **kwargs)
  File "/home/yawar/anaconda3/lib/python3.5/site-packages/click/core.py",
line 696, in main
    rv = self.invoke(ctx)
  File "/home/yawar/anaconda3/lib/python3.5/site-packages/click/core.py",
line 1060, in invoke
    return _process_result(sub_ctx.command.invoke(sub_ctx))
  File "/home/yawar/anaconda3/lib/python3.5/site-packages/click/core.py",
line 889, in invoke
    return ctx.invoke(self.callback, **ctx.params)
  File "/home/yawar/anaconda3/lib/python3.5/site-packages/click/core.py",
line 534, in invoke
    return callback(*args, **kwargs)
  File "/home/yawar/anaconda3/lib/python3.5/site-packages/msnoise/scripts/msnoise.py",
line 301, in stack
    main('ref', interval)
  File "/home/yawar/anaconda3/lib/python3.5/site-packages/msnoise/s04stack.py",
line 203, in main
    updated_days = updated_days_for_dates(db, start, end, pair.replace('_',
'.'), jobtype='CC', interval=datetime.timedelta(days=interval),returndays=
True)
  File "/home/yawar/anaconda3/lib/python3.5/site-packages/msnoise/api.py",
line 1189, in updated_days_for_dates
    days = session.query(Job).filter(Job.pair == pair).filter(Job.day >=
date1).filter(Job.day <= date2).filter(Job.jobtype ==
jobtype).filter(Job.lastmod >= lastmod).group_by(Job.day).
order_by(Job.day).all()
  File "/home/yawar/anaconda3/lib/python3.5/site-packages/sqlalchemy/orm/query.py",
line 2613, in all
    return list(self)
  File "/home/yawar/anaconda3/lib/python3.5/site-packages/sqlalchemy/orm/query.py",
line 2761, in __iter__
    return self._execute_and_instances(context)
  File "/home/yawar/anaconda3/lib/python3.5/site-packages/sqlalchemy/orm/query.py",
line 2776, in _execute_and_instances
    result = conn.execute(querycontext.statement, self._params)
  File "/home/yawar/anaconda3/lib/python3.5/site-packages/sqlalchemy/engine/base.py",
line 914, in execute
    return meth(self, multiparams, params)
  File "/home/yawar/anaconda3/lib/python3.5/site-packages/sqlalchemy/sql/elements.py",
line 323, in _execute_on_connection
    return connection._execute_clauseelement(self, multiparams, params)
  File "/home/yawar/anaconda3/lib/python3.5/site-packages/sqlalchemy/engine/base.py",
line 1010, in _execute_clauseelement
    compiled_sql, distilled_params
  File "/home/yawar/anaconda3/lib/python3.5/site-packages/sqlalchemy/engine/base.py",
line 1146, in _execute_context
    context)
  File "/home/yawar/anaconda3/lib/python3.5/site-packages/sqlalchemy/engine/base.py",
line 1341, in _handle_dbapi_exception
    exc_info
  File "/home/yawar/anaconda3/lib/python3.5/site-packages/sqlalchemy/util/compat.py",
line 202, in raise_from_cause
    reraise(type(exception), exception, tb=exc_tb, cause=cause)
  File "/home/yawar/anaconda3/lib/python3.5/site-packages/sqlalchemy/util/compat.py",
line 185, in reraise
    raise value.with_traceback(tb)
  File "/home/yawar/anaconda3/lib/python3.5/site-packages/sqlalchemy/engine/base.py",
line 1139, in _execute_context
    context)
  File "/home/yawar/anaconda3/lib/python3.5/site-packages/sqlalchemy/engine/default.py",
line 450, in do_execute
    cursor.execute(statement, parameters)
  File "/home/yawar/anaconda3/lib/python3.5/site-packages/pymysql/cursors.py",
line 166, in execute
    result = self._query(query)
  File "/home/yawar/anaconda3/lib/python3.5/site-packages/pymysql/cursors.py",
line 322, in _query
    conn.query(q)
  File "/home/yawar/anaconda3/lib/python3.5/site-packages/pymysql/connections.py",
line 835, in query
    self._affected_rows = self._read_query_result(unbuffered=unbuffered)
  File "/home/yawar/anaconda3/lib/python3.5/site-packages/pymysql/connections.py",
line 1019, in _read_query_result
    result.read()
  File "/home/yawar/anaconda3/lib/python3.5/site-packages/pymysql/connections.py",
line 1302, in read
    first_packet = self.connection._read_packet()
  File "/home/yawar/anaconda3/lib/python3.5/site-packages/pymysql/connections.py",
line 981, in _read_packet
    packet.check_error()
  File "/home/yawar/anaconda3/lib/python3.5/site-packages/pymysql/connections.py",
line 393, in check_error
    err.raise_mysql_exception(self._data)
  File "/home/yawar/anaconda3/lib/python3.5/site-packages/pymysql/err.py",
line 107, in raise_mysql_exception
    raise errorclass(errno, errval)
sqlalchemy.exc.InternalError: (pymysql.err.InternalError) (1055,
"Expression #1 of SELECT list is not in GROUP BY clause and contains
nonaggregated column 'msnoise.jobs.ref' which is not functionally dependent
on columns in GROUP BY clause; this is incompatible with
sql_mode=only_full_group_by") [SQL: 'SELECT jobs.ref AS jobs_ref, jobs.day
AS jobs_day, jobs.pair AS jobs_pair, jobs.jobtype AS jobs_jobtype,
jobs.flag AS jobs_flag, jobs.lastmod AS jobs_lastmod \nFROM jobs \nWHERE
jobs.pair = %(pair_1)s AND jobs.day >= %(day_1)s AND jobs.day <= %(day_2)s
AND jobs.jobtype = %(jobtype_1)s AND jobs.lastmod >= %(lastmod_1)s GROUP BY
jobs.day ORDER BY jobs.day'] [parameters: {'lastmod_1':
datetime.datetime(2018, 3, 24, 10, 59, 4, 395159), 'jobtype_1': 'CC',
'day_2': datetime.date(2018, 1, 1), 'pair_1': 'DF01.BHE:DF01.BHE', 'day_1':
datetime.date(1970, 1, 1)}]

Regards,
Yawar Hussain
Ph.D. Student, Geotechnical Engineering
University of Brasilia, Brazil.