[MSNoise] help
Thomas Lecocq
Thomas.Lecocq at seismology.be
Mon Jul 15 19:07:13 UTC 2019
Hi,
Please try to adapt your MySQL server config following this:
http://msnoise.org/doc/master/installation.html#mysql-mariadb-configuration
note you'll have to restart the mysql server after the changes.
Cheers,
Thomas
Le 15/07/2019 à 20:32, gaelle vanessa Nana a écrit :
> Hello group,
>
> i have Problem with the STACK.
> I did the CC, but when i start the STACK processus, some PB appear, i don't
> know what to do exactly.
> You can see below the error who appear on the terminal, after running the
> STACK.
>
> thank you for your help
>
>
> base) vanessa at NANA:~/noise1$ msnoise stack -r -m -i 10
> Lets STACK !
> 2019-07-15 19:23:45 [DEBUG] Starting the ref stack
> []
> 2019-07-15 19:23:45 [DEBUG] Processing XB_CM01:XB_CM02-ZZ-1
> Traceback (most recent call last):
> File
> "/home/vanessa/anaconda3/lib/python3.7/site-packages/sqlalchemy/engine/base.py",
>
> line 1244, in _execute_context
> cursor, statement, parameters, context
> File
> "/home/vanessa/anaconda3/lib/python3.7/site-packages/sqlalchemy/engine/default.py
> ", line 550, in do_execute
> cursor.execute(statement, parameters)
> File
> "/home/vanessa/anaconda3/lib/python3.7/site-packages/pymysql/cursors.py",
> line 17
> 0, in execute
> result = self._query(query)
> File
> "/home/vanessa/anaconda3/lib/python3.7/site-packages/pymysql/cursors.py",
> line 32
> 8, in _query
> conn.query(q)
> File
> "/home/vanessa/anaconda3/lib/python3.7/site-packages/pymysql/connections.py",
> lin
> e 517, in query
> self._affected_rows = self._read_query_result(unbuffered=unbuffered)
> File
> "/home/vanessa/anaconda3/lib/python3.7/site-packages/pymysql/connections.py",
> lin
> e 732, in _read_query_result
> result.read()
> File
> "/home/vanessa/anaconda3/lib/python3.7/site-packages/pymysql/connections.py",
> lin
> e 1075, in read
> first_packet = self.connection._read_packet()
> File
> "/home/vanessa/anaconda3/lib/python3.7/site-packages/pymysql/connections.py",
> lin
> e 684, in _read_packet
> packet.check_error()
> File
> "/home/vanessa/anaconda3/lib/python3.7/site-packages/pymysql/protocol.py",
> line 2
> 20, in check_error
> err.raise_mysql_exception(self._data)
> File "/home/vanessa/anaconda3/lib/python3.7/site-packages/pymysql/err.py",
> line 109, i
> n raise_mysql_exception
> raise errorclass(errno, errval)
> pymysql.err.InternalError: (1055, "Expression #1 of SELECT list is not in
> GROUP BY claus
> e and contains nonaggregated column 'msnoise.jobs.ref' which is not
> functionally depende
> nt on columns in GROUP BY clause; this is incompatible with
> sql_mode=only_full_group_by"
> )
>
> The above exception was the direct cause of the following exception:
>
> Traceback (most recent call last):
> File "/home/vanessa/anaconda3/bin/msnoise", line 10, in <module>
> sys.exit(run())
> File
> "/home/vanessa/anaconda3/lib/python3.7/site-packages/msnoise/scripts/msnoise.py",
> line 717, in run
> cli(obj={})
> File "/home/vanessa/anaconda3/lib/python3.7/site-packages/click/core.py",
> line 764, in
> __call__
> return self.main(*args, **kwargs)
> File "/home/vanessa/anaconda3/lib/python3.7/site-packages/click/core.py",
> line 717, in
> main
> rv = self.invoke(ctx)
> File "/home/vanessa/anaconda3/lib/python3.7/site-packages/click/core.py",
> line 1137, i
> n invoke
> return _process_result(sub_ctx.command.invoke(sub_ctx))
> File "/home/vanessa/anaconda3/lib/python3.7/site-packages/click/core.py",
> line 956, in
> invoke
> return ctx.invoke(self.callback, **ctx.params)
> File "/home/vanessa/anaconda3/lib/python3.7/site-packages/click/core.py",
> line 555, in
> invoke
> return callback(*args, **kwargs)
> File
> "/home/vanessa/anaconda3/lib/python3.7/site-packages/msnoise/scripts/msnoise.py",
> line 375, in stack
> main('ref', interval)
> File
> "/home/vanessa/anaconda3/lib/python3.7/site-packages/msnoise/s04stack.py",
> line 1
> 97, in main
> updated_days = updated_days_for_dates(db, start, end, pair.replace('_',
> '.'), jobtyp
> e='CC', interval=datetime.timedelta(days=interval),returndays=True)
> File "/home/vanessa/anaconda3/lib/python3.7/site-packages/msnoise/api.py",
> line 1255,
> in updated_days_for_dates
> group_by(Job.day).order_by(Job.day).all()
> File
> "/home/vanessa/anaconda3/lib/python3.7/site-packages/sqlalchemy/orm/query.py",
> li
> ne 3168, in all
> return list(self)
> File
> "/home/vanessa/anaconda3/lib/python3.7/site-packages/sqlalchemy/orm/query.py",
> li
> ne 3324, in __iter__
> return self._execute_and_instances(context)
> File
> "/home/vanessa/anaconda3/lib/python3.7/site-packages/sqlalchemy/orm/query.py",
> li
> ne 3349, in _execute_and_instances
> result = conn.execute(querycontext.statement, self._params)
> File
> "/home/vanessa/anaconda3/lib/python3.7/site-packages/sqlalchemy/engine/base.py",
>
> line 988, in execute
> return meth(self, multiparams, params)
> File
> "/home/vanessa/anaconda3/lib/python3.7/site-packages/sqlalchemy/sql/elements.py",
> line 287, in _execute_on_connection
> return connection._execute_clauseelement(self, multiparams, params)
> File
> "/home/vanessa/anaconda3/lib/python3.7/site-packages/sqlalchemy/engine/base.py",
>
> line 1107, in _execute_clauseelement
> distilled_params,
> File
> "/home/vanessa/anaconda3/lib/python3.7/site-packages/sqlalchemy/engine/base.py",
>
> line 1248, in _execute_context
> e, statement, parameters, cursor, context
> File
> "/home/vanessa/anaconda3/lib/python3.7/site-packages/sqlalchemy/engine/base.py",
>
> line 1466, in _handle_dbapi_exception
> util.raise_from_cause(sqlalchemy_exception, exc_info)
> File
> "/home/vanessa/anaconda3/lib/python3.7/site-packages/sqlalchemy/util/compat.py",
>
> line 399, in raise_from_cause
> reraise(type(exception), exception, tb=exc_tb, cause=cause)
> File
> "/home/vanessa/anaconda3/lib/python3.7/site-packages/sqlalchemy/util/compat.py",
>
> line 153, in reraise
> raise value.with_traceback(tb)
> File
> "/home/vanessa/anaconda3/lib/python3.7/site-packages/sqlalchemy/engine/base.py",
>
> line 1244, in _execute_context
> cursor, statement, parameters, context
> File
> "/home/vanessa/anaconda3/lib/python3.7/site-packages/sqlalchemy/engine/default.py
> ", line 550, in do_execute
> cursor.execute(statement, parameters)
> File
> "/home/vanessa/anaconda3/lib/python3.7/site-packages/pymysql/cursors.py",
> line 17
> 0, in execute
> result = self._query(query)
> File
> "/home/vanessa/anaconda3/lib/python3.7/site-packages/pymysql/cursors.py",
> line 32
> 8, in _query
> conn.query(q)
> File
> "/home/vanessa/anaconda3/lib/python3.7/site-packages/pymysql/connections.py",
> lin
> e 517, in query
> self._affected_rows = self._read_query_result(unbuffered=unbuffered)
> File
> "/home/vanessa/anaconda3/lib/python3.7/site-packages/pymysql/connections.py",
> lin
> e 732, in _read_query_result
> result.read()
> File
> "/home/vanessa/anaconda3/lib/python3.7/site-packages/pymysql/connections.py",
> lin
> e 1075, in read
> first_packet = self.connection._read_packet()
> File
> "/home/vanessa/anaconda3/lib/python3.7/site-packages/pymysql/connections.py",
> lin
> e 684, in _read_packet
> packet.check_error()
> File
> "/home/vanessa/anaconda3/lib/python3.7/site-packages/pymysql/protocol.py",
> line 2
> 20, in check_error
> err.raise_mysql_exception(self._data)
> File "/home/vanessa/anaconda3/lib/python3.7/site-packages/pymysql/err.py",
> line 109, i
> n raise_mysql_exception
> raise errorclass(errno, errval)
> sqlalchemy.exc.InternalError: (pymysql.err.InternalError) (1055,
> "Expression #1 of SELEC
> T list is not in GROUP BY clause and contains nonaggregated column
> 'msnoise.jobs.ref' wh
> ich is not functionally dependent on columns in GROUP BY clause; this is
> incompatible wi
> th sql_mode=only_full_group_by")
> [SQL: SELECT jobs.ref AS jobs_ref, jobs.day AS jobs_day, jobs.pair AS
> jobs_pair, jobs.jo
> btype AS jobs_jobtype, jobs.flag AS jobs_flag, jobs.lastmod AS jobs_lastmod
>
> FROM jobs
> WHERE jobs.pair = %(pair_1)s AND jobs.day >= %(day_1)s AND jobs.day <=
> %(day_2)s AND job
> s.jobtype = %(jobtype_1)s AND jobs.lastmod >= %(lastmod_1)s GROUP BY
> jobs.day ORDER BY j
> obs.day]
> [parameters: {'pair_1': 'XB.CM01:XB.CM02', 'day_1': datetime.date(2006, 1,
> 1), 'day_2':
> datetime.date(2007, 1, 1), 'jobtype_1': 'CC', 'lastmod_1':
> datetime.datetime(2019, 7, 5,
> 19, 23, 45, 798518)}]
> (Background on this error at: http://sqlalche.me/e/2j85)
>
>
> Le mer. 3 juil. 2019 à 08:07, Thomas Lecocq <Thomas.Lecocq at seismology.be> a
> écrit :
>
>> Hi,
>>
>> Could you try using an empty folder, as stated in the doc and here: "
>>
>> Directory is not empty, can't run tests here!"
>>
>> ?
>>
>> Thomas
>>
>> On 28/06/2019 15:01, gaelle vanessa Nana wrote:
>>> hello MSnoise group
>>> i have a problem,after installing Msnoise, i tried to run MSNOISE TEST
>> but
>>> there is some problem.
>>> I tried to install pyqt, pyside but no success.
>>> Please, if someone have an idea to solve this problem.
>>>
>>> cheers
>>>
>>> (base) vanessa at NANA:~$ msnoise test
>>> 2019-06-28 13:51:35 [DEBUG] CACHEDIR=/home/vanessa/.cache/matplotlib
>>> 2019-06-28 13:51:35 [DEBUG] Using fontManager instance from
>>> /home/vanessa/.cache/matplotlib/fontlist-v310.json
>>> 2019-06-28 13:51:36 [DEBUG] Loaded backend qt5agg version unknown.
>>> 2019-06-28 13:51:36 [DEBUG] Loaded backend qt5agg version unknown.
>>> 2019-06-28 13:51:36 [DEBUG] Loaded backend Qt5Agg version unknown.
>>> 2019-06-28 13:51:36 [DEBUG] Loaded backend agg version unknown.
>>> 2019-06-28 13:51:36 [DEBUG] Loaded backend agg version unknown.
>>> Directory is not empty, can't run tests here!
>>>
>>> _______________________________________________
>>> MSNoise mailing list
>>> MSNoise at mailman-as.oma.be
>>> http://mailman-as.oma.be/mailman/listinfo/msnoise
>> --
>> Dr. Thomas Lecocq
>> Geologist - Seismologist
>>
>> Seismology - Gravimetry
>> Royal Observatory of Belgium
>>
>> *
>> * * * * *
>> * * * *
>> ---------
>> http://www.seismology.be
>> http://msnoise.org
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>>
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